Here are the corresponding figures for genotype 2a
and for subtype 3a:
I really don't see any difference between these figures ... but when I look at the actual numbers I can see that the conserved columns are off by a few AAs. In genotype 3a there is an extra predictive column in E1 that is not present in the others. There is also a "double-wide" single AA linkage in E2 (the last column in E2) ... in the other genotypes it reduces to a single column but in 3a there are actually 2 positions.
I'll post the predictive positions later this afternoon.




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